/usr/include/libphylo/recognizeFormat.h is in rate4site 3.0.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | // $Id: recognizeFormat.h 962 2006-11-07 15:13:34Z privmane $
#ifndef ___RECOGNIZE_FORMAT
#define ___RECOGNIZE_FORMAT
#include "sequenceContainer.h"
class recognizeFormat{
public:
static sequenceContainer read(istream &infile, const alphabet* alph);
static void write(ostream &out, const sequenceContainer& sd);
//readUnAligned: the input sequences do not need to be aligned (not all sequences are the same length).
static sequenceContainer readUnAligned(istream &infile, const alphabet* alph);
};
#endif
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