/usr/include/libphylo/trivialAccelerator.h is in rate4site 3.0.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | // $Id: trivialAccelerator.h 1925 2007-04-04 16:40:22Z privmane $
#ifndef ___TRIVIAL_ACCELERATOR
#define ___TRIVIAL_ACCELERATOR
#include "pijAccelerator.h"
#include "replacementModel.h"
class trivialAccelerator : public pijAccelerator {
public:
explicit trivialAccelerator(const replacementModel* pb): _pb(pb->clone()) {};
trivialAccelerator(const trivialAccelerator& other):_pb(NULL){if (other._pb != NULL) _pb = other._pb->clone();}
const MDOUBLE Pij_t(const int i,const int j, const MDOUBLE d) const {return _pb->Pij_t(i,j,d);}
const MDOUBLE dPij_dt(const int i,const int j, const MDOUBLE d) const{return _pb->dPij_dt(i,j,d);};
const MDOUBLE d2Pij_dt2(const int i,const int j, const MDOUBLE d) const{return _pb->d2Pij_dt2(i,j,d);};
const MDOUBLE freq(const int i) const{return _pb->freq(i);}
virtual pijAccelerator* clone() const { return new trivialAccelerator(*this);}
virtual ~trivialAccelerator() {delete _pb;}
virtual const int alphabetSize() const {return _pb->alphabetSize();}
virtual replacementModel* getReplacementModel() const {return (_pb);}
private:
replacementModel* _pb;
};
#endif
// There is no distribution in the trivial accelerator. Actually, it's just an interface
// to the replacement Model and it doesn't accelerate anything.
// Every method retruns exactly the replacementModel corresponding method result.
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