/usr/include/libphylo/uniDistribution.h is in rate4site 3.0.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | // $Id: uniDistribution.h 2812 2007-11-25 10:32:11Z itaymay $
// version 2.00
// last modified 21 Mar 2004
#ifndef ___UNIFORM_DIST
#define ___UNIFORM_DIST
#include "distribution.h"
/***********************************************************
This represents a distribution of one line over the value 1:
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________|________
1
_globalRate represents the rate for two joint genes.
************************************************************/
class uniDistribution : public distribution {
public:
uniDistribution() {_globalRate=1;}
virtual const int categories() const { return 1;}
virtual void change_number_of_categories(int in_number_of_categories);
virtual const MDOUBLE rates(const int i) const { return _globalRate;};
virtual const MDOUBLE ratesProb(const int i) const { return 1.0;};
virtual distribution* clone() const { return new uniDistribution(*this); }
virtual void setGlobalRate(const MDOUBLE x) {_globalRate = x;}
virtual MDOUBLE getGlobalRate() const{return _globalRate;}
virtual const MDOUBLE getCumulativeProb(const MDOUBLE x) const {
if (x<1.0) return 0.0; else return 1.0;
}
MDOUBLE _globalRate;
};
#endif
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