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/usr/lib64/ugene/plugins/dotplot.plugin is in ugene 1.9.8+repack-0ubuntu4.

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<?xml version="1.0" encoding="iso-8859-1"?>
<ugene-plugin id="dotplot" version="1.9.8" ugene-version="1.9.8" qt-version="4.8.3" >
 <name>Dotplot viewer</name>
 <plugin-vendor>Unipro</plugin-vendor>
 <plugin-mode>ui</plugin-mode>
 <library>libdotplot.so</library>
 <platform name="unix" arch="64"/>
</ugene-plugin>