/usr/share/Yap/clpbn/discrete_utils.yap is in yap 6.2.2-6.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 | :- module(discrete_utils, [project_from_CPT/3,
reorder_CPT/5,
get_dist_size/2]).
:- use_module(dists, [get_dist_domain_size/2,
get_dist_domain/2]).
%
% remove columns from a table
%
project_from_CPT(V,tab(Table,Deps,Szs),tab(NewTable,NDeps,NSzs)) :-
propagate_evidence(V,Evs),
functor(Table,_,Max),
find_projection_factor(Deps, V, NDeps, Szs, NSzs, F, Sz),
OLoop is Max//(Sz*F),
project_outer_loop(0,OLoop,F,Sz,Table,Evs,NTabl),
NewTable =.. [t|NTabl].
propagate_evidence(V, Evs) :-
clpbn:get_atts(V, [evidence(Ev),dist(Id,_)]), !,
get_dist_domain(Id, Out),
generate_szs_with_evidence(Out,Ev,0,Evs,Found),
(var(Found) ->
clpbn:get_atts(V, [key(K)]),
throw(clpbn(evidence_does_not_match,K,Ev,[Out]))
;
true
).
propagate_evidence(_, _).
generate_szs_with_evidence([],_,_,[],_).
generate_szs_with_evidence([_|Out],Ev,Ev,[ok|Evs],found) :- !,
I is Ev+1,
generate_szs_with_evidence(Out,Ev,I,Evs,found).
generate_szs_with_evidence([_|Out],Ev,I0,[not_ok|Evs],Found) :-
I is I0+1,
generate_szs_with_evidence(Out,Ev,I,Evs,Found).
find_projection_factor([V|Deps], V1, Deps, [Sz|Szs], Szs, F, Sz) :-
V == V1, !,
mult(Szs, 1, F).
find_projection_factor([V|Deps], V1, [V|NDeps], [Sz|Szs], [Sz|NSzs], F, NSz) :-
find_projection_factor(Deps, V1, NDeps, Szs, NSzs, F, NSz).
mult([], F, F).
mult([Sz|Szs], Sz0, F) :-
SzI is Sz0*Sz,
mult(Szs, SzI, F).
project_outer_loop(OLoop,OLoop,_,_,_,_,[]) :- !.
project_outer_loop(I,OLoop,F,Sz,Table,Evs,NTabl) :-
Base is I*Sz*F,
project_mid_loop(0,F,Base,Sz,Table,Evs,NTabl,NTabl0),
I1 is I+1,
project_outer_loop(I1,OLoop,F,Sz,Table,Evs,NTabl0).
project_mid_loop(F,F,_,_,_,_,NTabl,NTabl) :- !.
project_mid_loop(I,F,Base,Sz,Table,Evs,[Ent|NTablF],NTabl0) :-
I1 is I+1,
NBase is I+Base,
project_inner_loop(0,Sz,Evs,NBase,F,Table,0.0,Ent),
project_mid_loop(I1,F,Base,Sz,Table,Evs,NTablF,NTabl0).
project_inner_loop(Sz,Sz,[],_,_,_,Ent,Ent) :- !.
project_inner_loop(I,Sz,[ok|Evs],NBase,F,Table,Ent0,Ent) :- !,
I1 is I+1,
Pos is NBase+I*F+1,
arg(Pos,Table,E1),
Ent1 is E1+Ent0,
project_inner_loop(I1,Sz,Evs,NBase,F,Table,Ent1,Ent).
project_inner_loop(I,Sz,[_|Evs],NBase,F,Table,Ent0,Ent) :- !,
I1 is I+1,
project_inner_loop(I1,Sz,Evs,NBase,F,Table,Ent0,Ent).
%
% Given a set of variables Vs0 and a discrete CPT T0,
% reorder according to keysort if Vs is unbound, or according to Vs
% resulting in CPT
% TF. Sizes of variables in Vs are given as Sizes.
%
reorder_CPT(Vs0, T0, Vs, TF, Sizes) :-
var(Vs), !,
get_sizes(Vs0, Szs),
numb_vars(Vs0, Szs, _, VPs0, VLs0),
keysort(VLs0, VLs),
compute_new_factors(VLs, _, Vs, Sizes),
get_factors(VLs0,Fs),
length(T0,L),
functor(TF,t,L),
copy_to_new_array(T0, 0, VPs0, Fs, TF).
reorder_CPT(Vs0, T0, Vs, TF, Sizes) :-
get_sizes(Vs0, Szs),
numb_vars(Vs0, Szs, _, VPs0, VLs0),
sort_according_to_parent(Vs, VLs0, VLs),
compute_new_factors(VLs, _, Vs, Sizes),
get_factors(VLs0,Fs),
length(T0,L),
functor(TF,t,L),
copy_to_new_array(T0, 0, VPs0, Fs, TF).
numb_vars([], [], 1, [], []).
numb_vars([V|Vs], [L|Ls], A0, [Ai|VPs], [V-(L,_)|VLs]) :-
numb_vars(Vs, Ls, Ai, VPs, VLs),
A0 is Ai*L.
sort_according_to_parent([],[], []).
sort_according_to_parent([V|Vs],VLs0, [Arg|VLs]) :-
fetch_var(V,VLs0,VLsI,Arg),
sort_according_to_parent(Vs,VLsI, VLs).
fetch_var(V,[V0-(L,A)|VLs],VLs,V0-(L,A)) :- V == V0, !.
fetch_var(V,[A|VLs0],[A|VLsI],Arg) :-
fetch_var(V,VLs0,VLsI,Arg).
compute_new_factors([], 1, [], []).
compute_new_factors([V-(L,F)|VLs], NF, [V|Vs], [L|Szs]) :-
compute_new_factors(VLs, F, Vs, Szs),
NF is F*L.
get_factors([],[]).
get_factors([_-(_,F)|VLs0],[F|Fs]) :-
get_factors(VLs0,Fs).
copy_to_new_array([], _, _, _, _).
copy_to_new_array([P|Ps], I, F0s, Fs, S) :-
convert_factor(F0s, Fs, I, N),
I1 is I+1,
N1 is N+1,
arg(N1,S,P),
copy_to_new_array(Ps, I1, F0s, Fs, S).
convert_factor([], [], _, 0).
convert_factor([F0|F0s], [F|Fs], I, OUT) :-
X is I//F0,
NI is I mod F0,
NEXT is F*X,
convert_factor(F0s, Fs, NI, OUT1),
OUT is OUT1+NEXT.
get_sizes([], []).
get_sizes([V|Deps], [Sz|Sizes]) :-
clpbn:get_atts(V, [dist(Id,_)]),
get_dist_domain_size(Id,Sz),
get_sizes(Deps, Sizes).
|