/usr/include/pbseq/alignment/algorithms/anchoring/BWTSearchImpl.hpp is in libblasr-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | #ifndef _BLASR_BWT_SEARCH_IMPL_HPP_
#define _BLASR_BWT_SEARCH_IMPL_HPP_
template<typename T_MappingBuffers>
int MapReadToGenome(BWT & bwt,
FASTASequence & seq,
std::vector<ChainedMatchPos> &matchPosList,
AnchorParameters & params, int & numBasesAnchored,
T_MappingBuffers & mappingBuffers) {
return MapReadToGenome(bwt, seq, matchPosList, params,
numBasesAnchored, mappingBuffers.spv, mappingBuffers.epv);
}
#endif
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