/usr/include/pbseq/alignment/algorithms/sorting/DifferenceCovers.hpp is in libblasr-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | #ifndef _BLASR_DIFFERENCE_COVERS_HPP_
#define _BLASR_DIFFERENCE_COVERS_HPP_
#include "../../../pbdata/Types.h"
#define N_COVERS 5
const UInt diffCovers[N_COVERS][60] = {
{7, 3, 1, 2, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
{32, 7, 1, 2, 3, 4, 8,12,20, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
{64, 9, 1, 2, 3, 6,15,17,35,43,60, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
{111,12, 1, 2, 3, 6,13,28,37,39,45,53,66,94, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
{2281, 58, 0, 1,2,3,4,5,6,7,8,9,19,38,57,76,95,114,133,152,171,190,229,268,307,346,385,424,463,502,541,580,619,658,697,736,775,814,853,892,931,951,971,991,1011,1031,1051,1071,1091,1111,1131,1132,1133,1134,1135,1136,1137,1138,1139, 1140}};
int InitializeDifferenceCover(UInt diffCoverSize, UInt &diffCoverLength, UInt *&diffCover);
#endif // _BLASR_DIFFERENCE_COVERS_HPP_
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