This package is 4.2 MB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-gviz/r-bioc-gviz_1.22.0-1_all.deb
.
View its full control file here:
debian/control
.
Plotting data and annotation information along genomic coordinates
This package depends on:
r-base-core (>= 3.4.2-1ubuntu4), r-api-3.4, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8)
.
This package does not recommend any other package.
This package suggests:
r-cran-xtable
.
This package does not conflict with any other package.
r-bioc-gviz 1.22.0-1 is in ubuntu - bionic / universe. This package's architecture is: architectureless.
File | Mime Type | Owner | Mode | Size |
---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/lib/
|
root:root | 0o755 | ||
/usr/lib/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/CITATION
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Gviz/data/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/data/alTrackGenes.rda
|
application/gzip | root:root | 0o644 | 3.1 KB |
/usr/lib/R/site-library/Gviz/data/biomTrack.rda
|
application/gzip | root:root | 0o644 | 11.1 KB |
/usr/lib/R/site-library/Gviz/data/bmTrack.rda
|
application/x-xz | root:root | 0o644 | 18.1 KB |
/usr/lib/R/site-library/Gviz/data/collapseTrack.rda
|
application/gzip | root:root | 0o644 | 1.2 KB |
/usr/lib/R/site-library/Gviz/data/cpgIslands.rda
|
application/gzip | root:root | 0o644 | 540 bytes |
/usr/lib/R/site-library/Gviz/data/cyp2b10.rda
|
application/gzip | root:root | 0o644 | 639 bytes |
/usr/lib/R/site-library/Gviz/data/denseAnnTrack.rda
|
application/gzip | root:root | 0o644 | 16.3 KB |
/usr/lib/R/site-library/Gviz/data/dtHoriz.rda
|
application/gzip | root:root | 0o644 | 12.4 KB |
/usr/lib/R/site-library/Gviz/data/geneDetails.rda
|
application/gzip | root:root | 0o644 | 619 bytes |
/usr/lib/R/site-library/Gviz/data/geneModels.rda
|
application/gzip | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Gviz/data/idTrack.rda
|
application/gzip | root:root | 0o644 | 3.9 KB |
/usr/lib/R/site-library/Gviz/data/itrack.rda
|
application/gzip | root:root | 0o644 | 9.6 KB |
/usr/lib/R/site-library/Gviz/data/twoGroups.rda
|
application/gzip | root:root | 0o644 | 1.5 KB |
/usr/lib/R/site-library/Gviz/data/ucscItems.rda
|
application/gzip | root:root | 0o644 | 253.5 KB |
/usr/lib/R/site-library/Gviz/DESCRIPTION
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Gviz/doc/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/doc/Gviz.pdf
|
application/pdf | root:root | 0o644 | 1.5 MB |
/usr/lib/R/site-library/Gviz/doc/Gviz.R
|
text/plain | root:root | 0o644 | 48.4 KB |
/usr/lib/R/site-library/Gviz/doc/Gviz.Rnw
|
text/x-tex | root:root | 0o644 | 125.6 KB |
/usr/lib/R/site-library/Gviz/doc/index.html
|
text/html | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Gviz/extdata/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/extdata/biomartVersionsLatest.txt
|
text/plain | root:root | 0o644 | 10.8 KB |
/usr/lib/R/site-library/Gviz/extdata/biomartVersionsNow.txt
|
text/plain | root:root | 0o644 | 7.0 KB |
/usr/lib/R/site-library/Gviz/extdata/gapped.bam
|
application/gzip | root:root | 0o644 | 94.7 KB |
/usr/lib/R/site-library/Gviz/extdata/gapped.bam.bai
|
application/octet-stream | root:root | 0o644 | 2.0 KB |
/usr/lib/R/site-library/Gviz/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam
|
application/gzip | root:root | 0o644 | 397.9 KB |
/usr/lib/R/site-library/Gviz/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam.bai
|
application/octet-stream | root:root | 0o644 | 7.3 KB |
/usr/lib/R/site-library/Gviz/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam
|
application/gzip | root:root | 0o644 | 359.9 KB |
/usr/lib/R/site-library/Gviz/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam.bai
|
application/octet-stream | root:root | 0o644 | 7.3 KB |
/usr/lib/R/site-library/Gviz/extdata/snps.bam
|
application/gzip | root:root | 0o644 | 154.1 KB |
/usr/lib/R/site-library/Gviz/extdata/snps.bam.bai
|
application/octet-stream | root:root | 0o644 | 21.5 KB |
/usr/lib/R/site-library/Gviz/extdata/test.2bit
|
application/octet-stream | root:root | 0o644 | 298.2 KB |
/usr/lib/R/site-library/Gviz/extdata/test.bam
|
application/gzip | root:root | 0o644 | 201.8 KB |
/usr/lib/R/site-library/Gviz/extdata/test.bam.bai
|
application/octet-stream | root:root | 0o644 | 91.5 KB |
/usr/lib/R/site-library/Gviz/extdata/test.bed
|
text/plain | root:root | 0o644 | 559 bytes |
/usr/lib/R/site-library/Gviz/extdata/test.bedGraph
|
text/plain | root:root | 0o644 | 270 bytes |
/usr/lib/R/site-library/Gviz/extdata/test.bw
|
application/octet-stream | root:root | 0o644 | 122.5 KB |
/usr/lib/R/site-library/Gviz/extdata/test.fa
|
text/plain | root:root | 0o644 | 296.6 KB |
/usr/lib/R/site-library/Gviz/extdata/test.fa.fai
|
text/plain | root:root | 0o644 | 45 bytes |
/usr/lib/R/site-library/Gviz/extdata/test.gff
|
text/plain | root:root | 0o644 | 4.3 KB |
/usr/lib/R/site-library/Gviz/extdata/test.gff1
|
text/plain | root:root | 0o644 | 4.3 KB |
/usr/lib/R/site-library/Gviz/extdata/test.gff2
|
text/plain | root:root | 0o644 | 12.7 KB |
/usr/lib/R/site-library/Gviz/extdata/test.gff3
|
text/plain | root:root | 0o644 | 12.7 KB |
/usr/lib/R/site-library/Gviz/extdata/test.gtf
|
text/plain | root:root | 0o644 | 14.1 KB |
/usr/lib/R/site-library/Gviz/extdata/test.wig
|
text/plain | root:root | 0o644 | 92 bytes |
/usr/lib/R/site-library/Gviz/help/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/help/aliases.rds
|
application/gzip | root:root | 0o644 | 2.7 KB |
/usr/lib/R/site-library/Gviz/help/AnIndex
|
text/plain | root:root | 0o644 | 15.7 KB |
/usr/lib/R/site-library/Gviz/help/Gviz.rdb
|
application/octet-stream | root:root | 0o644 | 747.6 KB |
/usr/lib/R/site-library/Gviz/help/Gviz.rdx
|
application/gzip | root:root | 0o644 | 787 bytes |
/usr/lib/R/site-library/Gviz/help/paths.rds
|
application/gzip | root:root | 0o644 | 382 bytes |
/usr/lib/R/site-library/Gviz/html/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/html/00Index.html
|
text/html | root:root | 0o644 | 43.6 KB |
/usr/lib/R/site-library/Gviz/html/R.css
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Gviz/INDEX
|
text/plain | root:root | 0o644 | 1.8 KB |
/usr/lib/R/site-library/Gviz/lib/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/lib/testUCSC.pl
|
text/x-perl | root:root | 0o755 | 836 bytes |
/usr/lib/R/site-library/Gviz/lib/ucscUrl.pl
|
text/x-perl | root:root | 0o755 | 967 bytes |
/usr/lib/R/site-library/Gviz/Meta/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/Meta/data.rds
|
application/gzip | root:root | 0o644 | 309 bytes |
/usr/lib/R/site-library/Gviz/Meta/features.rds
|
application/gzip | root:root | 0o644 | 112 bytes |
/usr/lib/R/site-library/Gviz/Meta/hsearch.rds
|
application/gzip | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/Gviz/Meta/links.rds
|
application/gzip | root:root | 0o644 | 2.5 KB |
/usr/lib/R/site-library/Gviz/Meta/nsInfo.rds
|
application/gzip | root:root | 0o644 | 1.8 KB |
/usr/lib/R/site-library/Gviz/Meta/package.rds
|
application/gzip | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Gviz/Meta/Rd.rds
|
application/gzip | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/Gviz/Meta/vignette.rds
|
application/gzip | root:root | 0o644 | 225 bytes |
/usr/lib/R/site-library/Gviz/NAMESPACE
|
text/plain | root:root | 0o644 | 5.0 KB |
/usr/lib/R/site-library/Gviz/NEWS
|
text/plain | root:root | 0o644 | 7.4 KB |
/usr/lib/R/site-library/Gviz/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/R/Gviz
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Gviz/R/Gviz.rdb
|
application/octet-stream | root:root | 0o644 | 810.7 KB |
/usr/lib/R/site-library/Gviz/R/Gviz.rdx
|
application/gzip | root:root | 0o644 | 7.1 KB |
/usr/lib/R/site-library/Gviz/scripts/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Gviz/scripts/documentation.R
|
text/plain | root:root | 0o644 | 70.2 KB |
/usr/lib/R/site-library/Gviz/scripts/functionality.R
|
text/plain | root:root | 0o644 | 9.7 KB |
/usr/lib/R/site-library/Gviz/scripts/loadIntoEnv.R
|
text/plain | root:root | 0o644 | 4.0 KB |
/usr/lib/R/site-library/Gviz/scripts/sourcePackage.R
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/lib/R/site-library/Gviz/scripts/testBiomartGenomeMappings.R
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/Gviz/scripts/testing.R
|
text/plain | root:root | 0o644 | 6.8 KB |
/usr/lib/R/site-library/Gviz/scripts/updateBiomartGenomeMappings.R
|
text/plain | root:root | 0o644 | 2.7 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-gviz/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-gviz/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 675 bytes |
/usr/share/doc/r-bioc-gviz/copyright
|
text/plain | root:root | 0o644 | 7.0 KB |
/usr/share/doc/r-bioc-gviz/examples/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-gviz/examples/vignettes/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-gviz/examples/vignettes/Gviz-refs.bib
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/share/doc/r-bioc-gviz/examples/vignettes/Gviz.Rnw.gz
|
application/gzip | root:root | 0o644 | 37.0 KB |
/usr/share/doc/r-bioc-gviz/examples/vignettes/ucsc1.pdf.gz
|
application/gzip | root:root | 0o644 | 151.4 KB |
/usr/share/doc/r-bioc-gviz/examples/vignettes/ucsc2.pdf.gz
|
application/gzip | root:root | 0o644 | 82.2 KB |
/usr/share/doc/r-bioc-gviz/README.test
|
text/plain | root:root | 0o644 | 1.0 KB |