This package is 1.1 MB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/a/augustus/augustus_3.3+dfsg-2build1_amd64.deb
.
View its full control file here:
debian/control.
gene prediction in eukaryotic genomes
This package depends on:
libbamtools2.4.0, libboost-iostreams1.65.1, libc6 (>= 2.15), libgcc1 (>= 1:4.0), libstdc++6 (>= 6), zlib1g (>= 1:1.2.3.3), augustus-data.
This package does not recommend any other package.
This package does not suggest any other package.
This package does not conflict with any other package.
augustus 3.3+dfsg-2build1 is in ubuntu - bionic / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/aln2wig
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application/x-sharedlib | root:root | 0o755 | 14.0 KB |
/usr/bin/augustus
|
application/x-sharedlib | root:root | 0o755 | 1.3 MB |
/usr/bin/bam2hints
|
application/x-sharedlib | root:root | 0o755 | 34.9 KB |
/usr/bin/bam2wig
|
application/x-sharedlib | root:root | 0o755 | 115.4 KB |
/usr/bin/checkTargetSortedness
|
application/x-sharedlib | root:root | 0o755 | 107.4 KB |
/usr/bin/compileSpliceCands
|
application/x-sharedlib | root:root | 0o755 | 18.0 KB |
/usr/bin/etraining
|
application/x-sharedlib | root:root | 0o755 | 1.5 MB |
/usr/bin/fastBlockSearch
|
application/x-sharedlib | root:root | 0o755 | 294.3 KB |
/usr/bin/filterBam
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application/x-sharedlib | root:root | 0o755 | 190.2 KB |
/usr/bin/homGeneMapping
|
application/x-sharedlib | root:root | 0o755 | 138.6 KB |
/usr/bin/joingenes
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application/x-sharedlib | root:root | 0o755 | 146.2 KB |
/usr/bin/prepareAlign
|
application/x-sharedlib | root:root | 0o755 | 34.1 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/augustus/
|
root:root | 0o755 | ||
/usr/share/augustus/scripts/
|
root:root | 0o755 | ||
/usr/share/augustus/scripts/augustus2browser.pl
|
text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/share/augustus/scripts/augustus2gbrowse.pl
|
text/x-perl | root:root | 0o755 | 389 bytes |
/usr/share/augustus/scripts/autoAug.pl
|
text/x-perl | root:root | 0o755 | 47.8 KB |
/usr/share/augustus/scripts/autoAugPred.pl
|
text/x-perl | root:root | 0o755 | 20.0 KB |
/usr/share/augustus/scripts/autoAugTrain.pl
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text/x-perl | root:root | 0o755 | 43.1 KB |
/usr/share/augustus/scripts/autoRun.pathInfo
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text/plain | root:root | 0o644 | 195 bytes |
/usr/share/augustus/scripts/bedgraph2wig.pl
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text/x-perl | root:root | 0o755 | 3.3 KB |
/usr/share/augustus/scripts/blat2gbrowse.pl
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text/x-perl | root:root | 0o755 | 4.3 KB |
/usr/share/augustus/scripts/blat2hints.pl
|
text/x-perl | root:root | 0o755 | 29.6 KB |
/usr/share/augustus/scripts/block2prfl.pl
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text/x-perl | root:root | 0o755 | 11.0 KB |
/usr/share/augustus/scripts/cegma2gff.pl
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text/x-perl | root:root | 0o755 | 2.2 KB |
/usr/share/augustus/scripts/checkParamArchive.pl
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text/x-perl | root:root | 0o755 | 3.8 KB |
/usr/share/augustus/scripts/checkUTR
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text/x-shellscript | root:root | 0o755 | 1.1 KB |
/usr/share/augustus/scripts/cleanDOSfasta.pl
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text/x-perl | root:root | 0o755 | 535 bytes |
/usr/share/augustus/scripts/clusterAndSplitGenes.pl
|
text/x-perl | root:root | 0o755 | 7.4 KB |
/usr/share/augustus/scripts/createAugustusJoblist.pl
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text/x-perl | root:root | 0o755 | 4.8 KB |
/usr/share/augustus/scripts/del_from_prfl.pl
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text/x-perl | root:root | 0o755 | 3.2 KB |
/usr/share/augustus/scripts/evalCGP.pl
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text/x-perl | root:root | 0o755 | 9.4 KB |
/usr/share/augustus/scripts/eval_dualdecomp.pl
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text/x-perl | root:root | 0o755 | 12.9 KB |
/usr/share/augustus/scripts/exonerate2hints.pl
|
text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/share/augustus/scripts/exoniphyDb2hints.pl
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text/x-perl | root:root | 0o755 | 1.3 KB |
/usr/share/augustus/scripts/extractTranscriptEnds.pl
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text/x-perl | root:root | 0o755 | 507 bytes |
/usr/share/augustus/scripts/filterGenesIn_mRNAname.pl
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text/x-perl | root:root | 0o755 | 2.1 KB |
/usr/share/augustus/scripts/filterGenesOut_mRNAname.pl
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text/x-perl | root:root | 0o755 | 1.7 KB |
/usr/share/augustus/scripts/filterGenes.pl
|
text/x-perl | root:root | 0o755 | 850 bytes |
/usr/share/augustus/scripts/filterInFrameStopCodons.pl
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text/x-perl | root:root | 0o755 | 1.1 KB |
/usr/share/augustus/scripts/filterMaf.pl
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text/x-perl | root:root | 0o755 | 2.9 KB |
/usr/share/augustus/scripts/filter-ppx.pl
|
text/x-perl | root:root | 0o755 | 435 bytes |
/usr/share/augustus/scripts/filterPSL.pl
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text/x-perl | root:root | 0o755 | 17.2 KB |
/usr/share/augustus/scripts/filterShrimp.pl
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text/x-perl | root:root | 0o755 | 4.4 KB |
/usr/share/augustus/scripts/filterSpliceHints.pl
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text/x-perl | root:root | 0o755 | 2.0 KB |
/usr/share/augustus/scripts/gbrowse.conf
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text/html | root:root | 0o644 | 7.9 KB |
/usr/share/augustus/scripts/gbrowseold2gff3.pl
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text/x-perl | root:root | 0o755 | 3.7 KB |
/usr/share/augustus/scripts/gbSmallDNA2gff.pl
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text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/share/augustus/scripts/getAnnoFasta.pl
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text/x-perl | root:root | 0o755 | 7.2 KB |
/usr/share/augustus/scripts/gff2gbSmallDNA.pl
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text/x-perl | root:root | 0o755 | 17.2 KB |
/usr/share/augustus/scripts/gff2ps_mycustom
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text/plain | root:root | 0o644 | 1.7 KB |
/usr/share/augustus/scripts/gffGetmRNA.pl
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text/x-perl | root:root | 0o755 | 4.0 KB |
/usr/share/augustus/scripts/gp2othergp.pl
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text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/share/augustus/scripts/gtf2bed.pl
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text/x-perl | root:root | 0o755 | 9.7 KB |
/usr/share/augustus/scripts/gtf2gff.pl
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text/x-perl | root:root | 0o755 | 14.1 KB |
/usr/share/augustus/scripts/gtf2gff.pl.origexit
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text/x-perl | root:root | 0o755 | 14.1 KB |
/usr/share/augustus/scripts/hal2maf_split.pl
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text/x-perl | root:root | 0o755 | 12.6 KB |
/usr/share/augustus/scripts/helpMod.pm
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text/plain | root:root | 0o644 | 8.0 KB |
/usr/share/augustus/scripts/intron2exex.pl
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text/x-perl | root:root | 0o755 | 4.4 KB |
/usr/share/augustus/scripts/join_aug_pred.pl
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text/x-perl | root:root | 0o755 | 8.5 KB |
/usr/share/augustus/scripts/join_mult_hints.pl
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text/x-perl | root:root | 0o755 | 1.2 KB |
/usr/share/augustus/scripts/joinPeptides.pl
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text/x-perl | root:root | 0o755 | 1.4 KB |
/usr/share/augustus/scripts/maf2conswig.pl
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text/x-perl | root:root | 0o755 | 3.4 KB |
/usr/share/augustus/scripts/makeMatchLists.pl
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text/x-perl | root:root | 0o755 | 468 bytes |
/usr/share/augustus/scripts/makeUtrTrainingSet.pl
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text/x-perl | root:root | 0o755 | 16.4 KB |
/usr/share/augustus/scripts/maskNregions.pl
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text/x-perl | root:root | 0o755 | 1.6 KB |
/usr/share/augustus/scripts/moveParameters.pl
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text/x-perl | root:root | 0o755 | 2.0 KB |
/usr/share/augustus/scripts/msa2prfl.pl
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text/x-perl | root:root | 0o755 | 20.2 KB |
/usr/share/augustus/scripts/new_species.pl
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text/x-perl | root:root | 0o755 | 7.3 KB |
/usr/share/augustus/scripts/optimize_augustus.pl
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text/x-perl | root:root | 0o755 | 65.0 KB |
/usr/share/augustus/scripts/opt_init_and_term_probs.pl
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text/x-perl | root:root | 0o755 | 6.9 KB |
/usr/share/augustus/scripts/parseSim4Output.pl
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text/x-perl | root:root | 0o755 | 3.5 KB |
/usr/share/augustus/scripts/partition_gtf2gb.pl
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text/x-perl | root:root | 0o755 | 16.7 KB |
/usr/share/augustus/scripts/pasapolyA2hints.pl
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text/x-perl | root:root | 0o755 | 2.1 KB |
/usr/share/augustus/scripts/peptides2alternatives.pl
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text/x-perl | root:root | 0o755 | 3.3 KB |
/usr/share/augustus/scripts/peptides2hints.pl
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text/x-perl | root:root | 0o755 | 6.6 KB |
/usr/share/augustus/scripts/phastconsDB2hints.pl
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text/x-perl | root:root | 0o755 | 2.7 KB |
/usr/share/augustus/scripts/polyA2hints.pl
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text/x-perl | root:root | 0o755 | 2.3 KB |
/usr/share/augustus/scripts/prints2prfl.pl
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text/x-perl | root:root | 0o755 | 10.3 KB |
/usr/share/augustus/scripts/pslMap.pl
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text/x-perl | root:root | 0o755 | 7.8 KB |
/usr/share/augustus/scripts/randomSplit.pl
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text/x-perl | root:root | 0o755 | 1.6 KB |
/usr/share/augustus/scripts/ratewig.pl
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text/x-perl | root:root | 0o755 | 584 bytes |
/usr/share/augustus/scripts/README.autoAug
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text/plain | root:root | 0o644 | 12.2 KB |
/usr/share/augustus/scripts/retroDB2hints.pl
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text/x-perl | root:root | 0o755 | 1.9 KB |
/usr/share/augustus/scripts/rmRedundantHints.pl
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text/x-perl | root:root | 0o755 | 1.4 KB |
/usr/share/augustus/scripts/runAllSim4.pl
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text/x-perl | root:root | 0o755 | 723 bytes |
/usr/share/augustus/scripts/samMap.pl
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text/x-perl | root:root | 0o755 | 4.9 KB |
/usr/share/augustus/scripts/scipiogff2gff.pl
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text/x-perl | root:root | 0o755 | 1.1 KB |
/usr/share/augustus/scripts/simpleFastaHeaders.pl
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text/x-perl | root:root | 0o755 | 1.2 KB |
/usr/share/augustus/scripts/simplifyFastaHeaders.pl
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text/x-perl | root:root | 0o755 | 2.5 KB |
/usr/share/augustus/scripts/SplicedAlignment.pm
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text/plain | root:root | 0o644 | 12.0 KB |
/usr/share/augustus/scripts/splitMfasta.pl
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text/x-perl | root:root | 0o755 | 1.8 KB |
/usr/share/augustus/scripts/split_wiggle.pl
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text/x-perl | root:root | 0o755 | 861 bytes |
/usr/share/augustus/scripts/summarizeACGTcontent.pl
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text/x-perl | root:root | 0o755 | 2.1 KB |
/usr/share/augustus/scripts/transMap2hints.pl
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text/x-perl | root:root | 0o755 | 18.8 KB |
/usr/share/augustus/scripts/uniquePeptides.pl
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text/x-perl | root:root | 0o755 | 1.9 KB |
/usr/share/augustus/scripts/utrgff2gbrowse.pl
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text/x-perl | root:root | 0o755 | 2.3 KB |
/usr/share/augustus/scripts/webserver-results.body
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text/html | root:root | 0o644 | 2.6 KB |
/usr/share/augustus/scripts/webserver-results.head
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text/html | root:root | 0o644 | 2.1 KB |
/usr/share/augustus/scripts/webserver-results.tail
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text/html | root:root | 0o644 | 3.0 KB |
/usr/share/augustus/scripts/weedMaf.pl
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text/x-perl | root:root | 0o755 | 1.6 KB |
/usr/share/augustus/scripts/wig2hints.pl
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text/x-perl | root:root | 0o755 | 5.2 KB |
/usr/share/augustus/scripts/wigchoose.pl
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text/x-perl | root:root | 0o755 | 2.8 KB |
/usr/share/augustus/scripts/writeResultsPage.pl
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text/x-perl | root:root | 0o755 | 15.3 KB |
/usr/share/augustus/scripts/yaml2gff.1.4.pl
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text/x-perl | root:root | 0o755 | 9.5 KB |
/usr/share/doc/
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root:root | 0o755 | ||
/usr/share/doc/augustus/
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root:root | 0o755 | ||
/usr/share/doc/augustus/changelog.Debian.gz
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application/gzip | root:root | 0o644 | 907 bytes |
/usr/share/doc/augustus/copyright
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text/plain | root:root | 0o644 | 3.4 KB |
/usr/share/doc/augustus/HISTORY.TXT.gz
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root:root | 0o777 | ||
/usr/share/man/
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root:root | 0o755 | ||
/usr/share/man/man1/
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root:root | 0o755 | ||
/usr/share/man/man1/aln2wig.1.gz
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application/gzip | root:root | 0o644 | 565 bytes |
/usr/share/man/man1/augustus.1.gz
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application/gzip | root:root | 0o644 | 1.6 KB |
/usr/share/man/man1/bam2hints.1.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man1/bam2wig.1.gz
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application/gzip | root:root | 0o644 | 683 bytes |
/usr/share/man/man1/checkTargetSortedness.1.gz
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application/gzip | root:root | 0o644 | 579 bytes |
/usr/share/man/man1/compileSpliceCands.1.gz
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application/gzip | root:root | 0o644 | 803 bytes |
/usr/share/man/man1/etraining.1.gz
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application/gzip | root:root | 0o644 | 683 bytes |
/usr/share/man/man1/fastBlockSearch.1.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/filterBam.1.gz
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application/gzip | root:root | 0o644 | 1.7 KB |
/usr/share/man/man1/homGeneMapping.1.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man1/joingenes.1.gz
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application/gzip | root:root | 0o644 | 2.0 KB |
/usr/share/man/man1/prepareAlign.1.gz
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application/gzip | root:root | 0o644 | 652 bytes |