/usr/lib/R/site-library/phangorn/extdata/ is in r-cran-phangorn 2.4.0-1.
This file is owned by root:root, with mode 0o755.
..
/usr/lib/R/site-library/phangorn/extdata/Blosum62.dat
/usr/lib/R/site-library/phangorn/extdata/Dayhoff.dat
/usr/lib/R/site-library/phangorn/extdata/FLU.dat
/usr/lib/R/site-library/phangorn/extdata/HIVb.dat
/usr/lib/R/site-library/phangorn/extdata/HIVw.dat
/usr/lib/R/site-library/phangorn/extdata/JTT.dat
/usr/lib/R/site-library/phangorn/extdata/MtZoa.dat
/usr/lib/R/site-library/phangorn/extdata/RtREV.dat
/usr/lib/R/site-library/phangorn/extdata/VT.dat
/usr/lib/R/site-library/phangorn/extdata/cpREV.dat
/usr/lib/R/site-library/phangorn/extdata/dayhoff-dcmut.dat
/usr/lib/R/site-library/phangorn/extdata/jtt-dcmut.dat
/usr/lib/R/site-library/phangorn/extdata/lg.dat
/usr/lib/R/site-library/phangorn/extdata/mtArt.dat
/usr/lib/R/site-library/phangorn/extdata/mtREV24.dat
/usr/lib/R/site-library/phangorn/extdata/mtmam.dat
/usr/lib/R/site-library/phangorn/extdata/trees/
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.Wang.out
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.woodmouse
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.Wang.out
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.woodmouse
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_distances.Wang.nxs
/usr/lib/R/site-library/phangorn/extdata/trees/Splits.txt
/usr/lib/R/site-library/phangorn/extdata/trees/primates.dna
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.fasta
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.mrbayes.nex.con
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.mrbayes.nex.run1.t
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.mrbayes.nex.run2.t
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.nxs
/usr/lib/R/site-library/phangorn/extdata/wag.dat