/usr/lib/R/site-library/phangorn/extdata/MtZoa.dat is in r-cran-phangorn 2.4.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | 3.3
1.7 33.6
16.1 3.2 617.0
272.5 61.1 94.6 9.5
7.3 231.0 190.3 19.3 49.1
17.1 6.4 174.0 883.6 3.4 349.4
289.3 7.2 99.3 26.0 82.4 8.9 43.1
2.3 61.7 228.9 55.6 37.5 421.8 14.9 7.4
33.2 0.2 24.3 1.5 48.8 0.2 7.3 3.4 1.6
15.6 4.1 7.9 0.5 59.7 23.0 1.0 3.5 6.6 425.2
0.2 292.3 413.4 0.2 0.2 334.0 163.2 10.1 23.9 8.4 6.7
136.5 3.8 73.7 0.2 264.8 83.9 0.2 52.2 7.1 449.7 636.3 83.0
26.5 0.2 12.9 2.0 167.8 9.5 0.2 5.8 13.1 90.3 234.2 16.3 215.6
61.8 7.5 22.6 0.2 8.1 52.2 20.6 1.3 15.6 2.6 11.4 24.3 5.4 10.5
644.9 11.8 420.2 51.4 656.3 96.4 38.4 257.1 23.1 7.2 15.2 144.9 95.3 32.2 79.7
378.1 3.2 184.6 2.3 199.0 39.4 34.5 5.2 19.4 222.3 50.0 75.5 305.1 19.3 56.9 666.3
3.1 16.9 6.4 0.2 36.1 6.1 3.5 12.3 4.5 9.7 27.2 6.6 48.7 58.2 1.3 10.3 3.6
2.1 13.8 141.6 13.9 76.7 52.3 10.0 4.3 266.5 13.1 5.7 45.0 41.4 590.5 4.2 29.7 29.0 79.8
321.9 5.1 7.1 3.7 243.8 9.0 16.3 23.7 0.3 1710.6 126.1 11.1 279.6 59.6 17.9 49.5 396.4 13.7 15.6
0.068880 0.021037 0.030390 0.020696 0.009966 0.018623 0.024989 0.071968 0.026814 0.085072 0.156717 0.019276 0.050652 0.081712 0.044803 0.080535 0.056386 0.027998 0.037404 0.066083
Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val
// end of file
Rota-Stabelli, O., Z. Yang, and M. Telford. 2009. MtZoa: a general mitochondrial amino acid substitutions model for animal evolutionary studies. Mol. Phyl. Evol.
|