About

This package is 3.6 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/s/spades/spades_3.11.1+dfsg-1_amd64.deb .

View its full control file here: debian/control.

Description

genome assembler for single-cell and isolates data sets

Relations

This package depends on: libc6 (>= 2.15), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libhat-trie0, libjemalloc1 (>= 2.1.1), libnlopt0 (>= 2.2.4), libssw0, libstdc++6 (>= 6), zlib1g (>= 1:1.2.3.3), python, python-joblib, python-yaml, bwa, bamtools, samtools.

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

spades 3.11.1+dfsg-1 is in ubuntu - bionic / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 255 bytes
prerm text/x-shellscript N/A N/A 251 bytes
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/dipspades root:root 0o777
/usr/bin/dipspades.py root:root 0o777
/usr/bin/metaspades root:root 0o777
/usr/bin/metaspades.py root:root 0o777
/usr/bin/plasmidspades root:root 0o777
/usr/bin/plasmidspades.py root:root 0o777
/usr/bin/rnaspades root:root 0o777
/usr/bin/rnaspades.py root:root 0o777
/usr/bin/spades text/x-shellscript root:root 0o755 224 bytes
/usr/bin/spades.py root:root 0o777
/usr/bin/truspades root:root 0o777
/usr/bin/truspades.py root:root 0o777
/usr/lib/ root:root 0o755
/usr/lib/spades/ root:root 0o755
/usr/lib/spades/bin/ root:root 0o755
/usr/lib/spades/bin/bwa-spades root:root 0o777
/usr/lib/spades/bin/corrector application/x-sharedlib root:root 0o755 1.1 MB
/usr/lib/spades/bin/dipspades application/x-sharedlib root:root 0o755 3.0 MB
/usr/lib/spades/bin/dipspades.py text/plain root:root 0o755 4.6 KB
/usr/lib/spades/bin/hammer application/x-sharedlib root:root 0o755 1.0 MB
/usr/lib/spades/bin/ionhammer application/x-sharedlib root:root 0o755 1.6 MB
/usr/lib/spades/bin/metaspades.py text/plain root:root 0o755 54.6 KB
/usr/lib/spades/bin/plasmidspades.py text/plain root:root 0o755 54.6 KB
/usr/lib/spades/bin/rnaspades.py text/plain root:root 0o755 54.6 KB
/usr/lib/spades/bin/scaffold_correction application/x-sharedlib root:root 0o755 2.2 MB
/usr/lib/spades/bin/spades application/x-sharedlib root:root 0o755 6.5 MB
/usr/lib/spades/bin/spades_init.py text/x-python root:root 0o644 1.8 KB
/usr/lib/spades/bin/spades.py text/plain root:root 0o755 55.2 KB
/usr/lib/spades/bin/truspades.py text/plain root:root 0o755 8.7 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc-base/ root:root 0o755
/usr/share/doc-base/dipspades text/plain root:root 0o644 843 bytes
/usr/share/doc-base/spades text/plain root:root 0o644 614 bytes
/usr/share/doc/spades/ root:root 0o755
/usr/share/doc/spades/changelog.Debian.gz application/gzip root:root 0o644 820 bytes
/usr/share/doc/spades/copyright text/plain root:root 0o644 19.9 KB
/usr/share/doc/spades/dipspades_manual.html text/html root:root 0o644 12.3 KB
/usr/share/doc/spades/manual.html text/html root:root 0o644 59.0 KB
/usr/share/doc/spades/rnaspades_manual.html text/html root:root 0o644 6.3 KB
/usr/share/doc/spades/truspades_manual.html text/html root:root 0o644 10.5 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/dipspades.1.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man1/dipspades.py.1.gz root:root 0o777
/usr/share/man/man1/metaspades.1.gz application/gzip root:root 0o644 430 bytes
/usr/share/man/man1/metaspades.py.1.gz root:root 0o777
/usr/share/man/man1/plasmidspades.1.gz application/gzip root:root 0o644 436 bytes
/usr/share/man/man1/plasmidspades.py.1.gz root:root 0o777
/usr/share/man/man1/rnaspades.1.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/rnaspades.py.1.gz root:root 0o777
/usr/share/man/man1/spades.1.gz application/gzip root:root 0o644 1.6 KB
/usr/share/man/man1/spades.py.1.gz root:root 0o777
/usr/share/man/man1/truspades.1.gz application/gzip root:root 0o644 737 bytes
/usr/share/man/man1/truspades.py.1.gz root:root 0o777
/usr/share/python/ root:root 0o755
/usr/share/python/runtime.d/ root:root 0o755
/usr/share/python/runtime.d/spades.rtupdate text/x-shellscript root:root 0o755 231 bytes
/usr/share/spades/ root:root 0o755
/usr/share/spades/configs/ root:root 0o755
/usr/share/spades/configs/corrector/ root:root 0o755
/usr/share/spades/configs/corrector/corrector.info text/plain root:root 0o644 230 bytes
/usr/share/spades/configs/debruijn/ root:root 0o755
/usr/share/spades/configs/debruijn/careful_mda_mode.info text/plain root:root 0o644 543 bytes
/usr/share/spades/configs/debruijn/careful_mode.info text/plain root:root 0o644 612 bytes
/usr/share/spades/configs/debruijn/config.info text/x-c root:root 0o644 4.2 KB
/usr/share/spades/configs/debruijn/construction.info text/plain root:root 0o644 575 bytes
/usr/share/spades/configs/debruijn/detail_info_printer.info text/plain root:root 0o644 1019 bytes
/usr/share/spades/configs/debruijn/diploid_mode.info text/plain root:root 0o644 128 bytes
/usr/share/spades/configs/debruijn/distance_estimation.info text/plain root:root 0o644 1.4 KB
/usr/share/spades/configs/debruijn/large_genome_mode.info text/plain root:root 0o644 202 bytes
/usr/share/spades/configs/debruijn/mda_mode.info text/plain root:root 0o644 2.5 KB
/usr/share/spades/configs/debruijn/meta_mode.info text/plain root:root 0o644 4.3 KB
/usr/share/spades/configs/debruijn/moleculo_mode.info text/plain root:root 0o644 2.8 KB
/usr/share/spades/configs/debruijn/pe_params.info text/plain root:root 0o644 4.2 KB
/usr/share/spades/configs/debruijn/plasmid_mode.info text/plain root:root 0o644 246 bytes
/usr/share/spades/configs/debruijn/rna_fast_mode.info text/plain root:root 0o644 396 bytes
/usr/share/spades/configs/debruijn/rna_mode.info text/plain root:root 0o644 4.2 KB
/usr/share/spades/configs/debruijn/simplification.info text/plain root:root 0o644 6.0 KB
/usr/share/spades/configs/debruijn/toy.info text/plain root:root 0o644 43 bytes
/usr/share/spades/configs/debruijn/tsa.info text/plain root:root 0o644 131 bytes
/usr/share/spades/configs/dipspades/ root:root 0o755
/usr/share/spades/configs/dipspades/config.info text/plain root:root 0o644 2.6 KB
/usr/share/spades/configs/hammer/ root:root 0o755
/usr/share/spades/configs/hammer/config.info text/plain root:root 0o644 1.4 KB
/usr/share/spades/configs/ionhammer/ root:root 0o755
/usr/share/spades/configs/ionhammer/ionhammer.cfg text/plain root:root 0o644 381 bytes
/usr/share/spades/dipspades_manual.html text/html root:root 0o644 12.3 KB
/usr/share/spades/manual.html text/html root:root 0o644 59.0 KB
/usr/share/spades/rnaspades_manual.html text/html root:root 0o644 6.3 KB
/usr/share/spades/spades_pipeline/ root:root 0o755
/usr/share/spades/spades_pipeline/common/ root:root 0o755
/usr/share/spades/spades_pipeline/common/alignment.py text/plain root:root 0o644 2.7 KB
/usr/share/spades/spades_pipeline/common/__init__.py application/x-empty root:root 0o644 0 bytes
/usr/share/spades/spades_pipeline/common/parallel_launcher.py text/x-c++ root:root 0o644 2.3 KB
/usr/share/spades/spades_pipeline/common/sam_parser.py text/x-c++ root:root 0o644 8.8 KB
/usr/share/spades/spades_pipeline/common/SeqIO.py text/x-c++ root:root 0o644 4.7 KB
/usr/share/spades/spades_pipeline/corrector_logic.py text/x-python root:root 0o644 2.4 KB
/usr/share/spades/spades_pipeline/dipspades_logic.py text/x-python root:root 0o644 11.4 KB
/usr/share/spades/spades_pipeline/hammer_logic.py text/x-python root:root 0o644 7.3 KB
/usr/share/spades/spades_pipeline/lucigen_nxmate.py text/x-c++ root:root 0o644 21.9 KB
/usr/share/spades/spades_pipeline/options_storage.py text/x-python root:root 0o644 22.8 KB
/usr/share/spades/spades_pipeline/process_cfg.py text/x-python root:root 0o644 4.4 KB
/usr/share/spades/spades_pipeline/spades_logic.py text/x-python root:root 0o644 22.8 KB
/usr/share/spades/spades_pipeline/support.py text/x-python root:root 0o644 39.8 KB
/usr/share/spades/spades_pipeline/truspades/ root:root 0o755
/usr/share/spades/spades_pipeline/truspades/barcode_extraction.py text/x-c++ root:root 0o644 3.7 KB
/usr/share/spades/spades_pipeline/truspades/break_by_coverage.py text/plain root:root 0o644 5.5 KB
/usr/share/spades/spades_pipeline/truspades/generate_quality.py text/x-python root:root 0o644 1.8 KB
/usr/share/spades/spades_pipeline/truspades/id_generation.py text/x-python root:root 0o644 2.1 KB
/usr/share/spades/spades_pipeline/truspades/launch_options.py text/x-c++ root:root 0o644 6.3 KB
/usr/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py text/x-python root:root 0o644 1.5 KB
/usr/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py text/x-python root:root 0o644 2.3 KB
/usr/share/spades/spades_pipeline/truspades/reference_construction.py text/plain root:root 0o644 6.2 KB
/usr/share/spades/spades_pipeline/truspades/string_dist_utils.py text/x-python root:root 0o644 1.7 KB
/usr/share/spades/test_dataset/ root:root 0o755
/usr/share/spades/test_dataset/ecoli_1K_1.fq.gz application/gzip root:root 0o644 114.9 KB
/usr/share/spades/test_dataset/ecoli_1K_2.fq.gz application/gzip root:root 0o644 119.2 KB
/usr/share/spades/test_dataset/genes_1K.gff text/plain root:root 0o644 132 bytes
/usr/share/spades/test_dataset/genes_1K.txt text/plain root:root 0o644 79 bytes
/usr/share/spades/test_dataset/operons_1K.gff text/plain root:root 0o644 74 bytes
/usr/share/spades/test_dataset/operons_1K.txt text/plain root:root 0o644 40 bytes
/usr/share/spades/test_dataset_plasmid/ root:root 0o755
/usr/share/spades/test_dataset_plasmid/pl1.fq.gz application/gzip root:root 0o644 66.6 KB
/usr/share/spades/test_dataset_plasmid/pl2.fq.gz application/gzip root:root 0o644 66.7 KB
/usr/share/spades/test_dataset/reference_1K.fa.gz application/gzip root:root 0o644 518 bytes
/usr/share/spades/test_dataset_truspades/ root:root 0o755
/usr/share/spades/test_dataset_truspades/A_R1.fastq.gz application/gzip root:root 0o644 73.8 KB
/usr/share/spades/test_dataset_truspades/A_R2.fastq.gz application/gzip root:root 0o644 76.7 KB
/usr/share/spades/test_dataset_truspades/B_R1.fastq.gz application/gzip root:root 0o644 73.8 KB
/usr/share/spades/test_dataset_truspades/B_R2.fastq.gz application/gzip root:root 0o644 76.7 KB
/usr/share/spades/truspades_manual.html text/html root:root 0o644 10.5 KB
/usr/share/spades/VERSION text/plain root:root 0o644 7 bytes