/usr/include/blasr/datastructures/alignment/CmpFile.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | #ifndef _BLASR_CMP_FILE_HPP_
#define _BLASR_CMP_FILE_HPP_
#include "reads/ReadType.hpp"
#include "datastructures/alignment/CmpIndexedStringTable.h"
#include "saf/AlnGroup.hpp"
#include "saf/AlnInfo.hpp"
#include "saf/RefGroup.hpp"
#include "saf/RefInfo.hpp"
#include "saf/MovieInfo.hpp"
#include "Enumerations.h"
#include <vector>
class CmpFile {
public:
int lastRow;
std::string readTypeString, index, version, commandLine;
ReadType::ReadTypeEnum readType;
void StoreReadType(std::string &readTypeStringP);
CmpIndexedStringTable readGroupTable, movieNameTable, refSeqTable;
vector<string> colNames;
PlatformId platformId;
AlnGroup alnGroup;
AlnInfo alnInfo;
RefGroup refGroup;
RefInfo refInfo;
MovieInfo movieInfo;
};
#endif
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