/usr/include/blasr/datastructures/alignment/ is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o755.
..
/usr/include/blasr/datastructures/alignment/AlignedPair.h
/usr/include/blasr/datastructures/alignment/Alignment.hpp
/usr/include/blasr/datastructures/alignment/AlignmentCandidate.hpp
/usr/include/blasr/datastructures/alignment/AlignmentContext.hpp
/usr/include/blasr/datastructures/alignment/AlignmentGapList.h
/usr/include/blasr/datastructures/alignment/AlignmentMap.hpp
/usr/include/blasr/datastructures/alignment/AlignmentStats.hpp
/usr/include/blasr/datastructures/alignment/ByteAlignment.h
/usr/include/blasr/datastructures/alignment/CmpFile.hpp
/usr/include/blasr/datastructures/alignment/CmpIndexedStringTable.h
/usr/include/blasr/datastructures/alignment/CmpReadGroupTable.h
/usr/include/blasr/datastructures/alignment/CmpRefSeqTable.h
/usr/include/blasr/datastructures/alignment/FilterCriteria.hpp
/usr/include/blasr/datastructures/alignment/Path.h
/usr/include/blasr/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp
/usr/include/blasr/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp
/usr/include/blasr/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp
/usr/include/blasr/datastructures/alignmentset/SAMQVConversion.hpp
/usr/include/blasr/datastructures/alignmentset/SAMSupplementalQVList.hpp