/usr/include/blasr/datastructures/alignment/Path.h is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | #ifndef _BLASR_PATH_H_
#define _BLASR_PATH_H_
enum Arrow { Diagonal, Up, Left,
AffineInsUp, AffineInsOpen, AffineInsClose,
AffineDelLeft, AffineDelOpen, AffineDelClose,
AffineHPInsUp, AffineHPInsOpen, AffineHPInsClose,
NoArrow,
DiagonalXYZ,
InsertX,InsertY,InsertZ, // imply diagonal yz/xz/xy
DiagonalXY, DiagonalYZ, DiagonalXZ, // imply insertion of Z/X/Y,
//
// These are used to denote an affine gap has been closed
// from a different matrix. This is used in OneGap alignment.
//
AffineLongDelLeft, AffineLongDelClose,
AffineLongIns, AffineLongInsClose,
Star
};
enum MatrixLabel {Match, AffineHPIns, AffineIns, AffineDel, AffineHPDel};
#endif
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