libblasr-dev 0~20161219-1 in debian - stretch / main

About

This package is 1.6 MB. It is available at http://ftp.debian.org/debian/pool/main/p/pbseqlib/libblasr-dev_0~20161219-1_amd64.deb .

View its full control file here: debian/control.

Description

tools for aligning PacBio reads to target sequences (development files)

Relations

This package depends on: libblasr (= 0~20161219-1).

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

libblasr-dev 0~20161219-1 is in debian - stretch / main. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/include/ root:root 0o755
/usr/include/pbseq/ root:root 0o755
/usr/include/pbseq/alignment/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/alignment/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp text/x-c root:root 0o644 20.6 KB
/usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp text/x-c root:root 0o644 14.0 KB
/usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp text/plain root:root 0o644 216 bytes
/usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp text/x-c root:root 0o644 5.3 KB
/usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp text/x-c root:root 0o644 17.7 KB
/usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp text/x-c++ root:root 0o644 469 bytes
/usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp text/x-c root:root 0o644 3.9 KB
/usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp text/x-c++ root:root 0o644 14.6 KB
/usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp text/x-c root:root 0o644 5.3 KB
/usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp text/x-c root:root 0o644 871 bytes
/usr/include/pbseq/alignment/algorithms/alignment/GraphPaperImpl.hpp text/plain root:root 0o644 4.2 KB
/usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp text/x-c++ root:root 0o644 20.9 KB
/usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp text/x-c root:root 0o644 4.7 KB
/usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp text/x-c root:root 0o644 10.3 KB
/usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp text/x-c root:root 0o644 12.5 KB
/usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp text/x-c++ root:root 0o644 1.8 KB
/usr/include/pbseq/alignment/algorithms/alignment/ScoreMatrices.hpp text/x-c root:root 0o644 383 bytes
/usr/include/pbseq/alignment/algorithms/alignment/sdp/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp text/x-c root:root 0o644 2.5 KB
/usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp text/x-c root:root 0o644 25.8 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSort.hpp text/x-c++ root:root 0o644 425 bytes
/usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp text/x-c root:root 0o644 374 bytes
/usr/include/pbseq/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h text/x-c root:root 0o644 5.6 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPColumn.hpp text/x-c++ root:root 0o644 545 bytes
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPFragment.hpp text/x-c++ root:root 0o644 2.8 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSet.hpp text/x-c++ root:root 0o644 1.1 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp text/x-c root:root 0o644 2.2 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp text/x-c root:root 0o644 1.3 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp text/x-c root:root 0o644 10.4 KB
/usr/include/pbseq/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h text/x-c root:root 0o644 862 bytes
/usr/include/pbseq/alignment/algorithms/alignment/StringToScoreMatrix.hpp text/x-c root:root 0o644 212 bytes
/usr/include/pbseq/alignment/algorithms/alignment/SWAlign.hpp text/x-c root:root 0o644 540 bytes
/usr/include/pbseq/alignment/algorithms/alignment/SWAlignImpl.hpp text/x-c root:root 0o644 15.3 KB
/usr/include/pbseq/alignment/algorithms/anchoring/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpoint.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpointImpl.hpp text/x-c root:root 0o644 2.3 KB
/usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp text/x-c root:root 0o644 1013 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/BWTSearchImpl.hpp text/plain root:root 0o644 446 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/ClusterProbability.hpp text/x-c root:root 0o644 366 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/Coordinate.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp text/x-c++ root:root 0o644 5.9 KB
/usr/include/pbseq/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp text/x-c root:root 0o644 33.0 KB
/usr/include/pbseq/alignment/algorithms/anchoring/GlobalChain.hpp text/x-c root:root 0o644 1.3 KB
/usr/include/pbseq/alignment/algorithms/anchoring/GlobalChainImpl.hpp text/x-c root:root 0o644 6.2 KB
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValue.hpp text/x-c root:root 0o644 701 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValueImpl.hpp text/x-c root:root 0o644 4.5 KB
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightor.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp text/x-c root:root 0o644 3.7 KB
/usr/include/pbseq/alignment/algorithms/anchoring/LISQValueWeightor.hpp text/x-c++ root:root 0o644 936 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightor.hpp text/x-c++ root:root 0o644 272 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp text/plain root:root 0o644 364 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp text/x-c root:root 0o644 792 bytes
/usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp text/x-c root:root 0o644 3.4 KB
/usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArray.hpp text/x-c root:root 0o644 1.7 KB
/usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp text/x-c root:root 0o644 10.8 KB
/usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTree.hpp text/x-c++ root:root 0o644 1.8 KB
/usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp text/plain root:root 0o644 9.8 KB
/usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchors.hpp text/x-c root:root 0o644 1.5 KB
/usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp text/plain root:root 0o644 4.9 KB
/usr/include/pbseq/alignment/algorithms/compare/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/compare/CompareStrings.hpp text/x-c++ root:root 0o644 1.8 KB
/usr/include/pbseq/alignment/algorithms/sorting/ root:root 0o755
/usr/include/pbseq/alignment/algorithms/sorting/DifferenceCovers.hpp text/x-c root:root 0o644 1.3 KB
/usr/include/pbseq/alignment/algorithms/sorting/Karkkainen.hpp text/x-c root:root 0o644 4.4 KB
/usr/include/pbseq/alignment/algorithms/sorting/LightweightSuffixArray.hpp text/x-c++ root:root 0o644 2.9 KB
/usr/include/pbseq/alignment/algorithms/sorting/MultikeyQuicksort.hpp text/x-c root:root 0o644 1.6 KB
/usr/include/pbseq/alignment/algorithms/sorting/qsufsort.hpp text/x-c++ root:root 0o644 14.4 KB
/usr/include/pbseq/alignment/anchoring/ root:root 0o755
/usr/include/pbseq/alignment/anchoring/AnchorParameters.hpp text/x-c++ root:root 0o644 846 bytes
/usr/include/pbseq/alignment/bwt/ root:root 0o755
/usr/include/pbseq/alignment/bwt/BWT.hpp text/x-c++ root:root 0o644 7.7 KB
/usr/include/pbseq/alignment/bwt/Occ.hpp text/x-c++ root:root 0o644 7.9 KB
/usr/include/pbseq/alignment/bwt/PackedHash.hpp text/x-c++ root:root 0o644 12.0 KB
/usr/include/pbseq/alignment/bwt/Pos.hpp text/x-c++ root:root 0o644 1.1 KB
/usr/include/pbseq/alignment/datastructures/ root:root 0o755
/usr/include/pbseq/alignment/datastructures/alignment/ root:root 0o755
/usr/include/pbseq/alignment/datastructures/alignment/AlignedPair.h text/x-c root:root 0o644 263 bytes
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp text/x-c++ root:root 0o644 12.8 KB
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentContext.hpp text/x-c++ root:root 0o644 678 bytes
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentGapList.h text/x-c root:root 0o644 380 bytes
/usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp text/x-c++ root:root 0o644 5.0 KB
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentMap.hpp text/x-c root:root 0o644 402 bytes
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp text/x-c++ root:root 0o644 484 bytes
/usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h text/x-c root:root 0o644 12.3 KB
/usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp text/x-c root:root 0o644 881 bytes
/usr/include/pbseq/alignment/datastructures/alignment/CmpIndexedStringTable.h text/x-c root:root 0o644 1.4 KB
/usr/include/pbseq/alignment/datastructures/alignment/CmpReadGroupTable.h text/x-c root:root 0o644 394 bytes
/usr/include/pbseq/alignment/datastructures/alignment/CmpRefSeqTable.h text/x-c root:root 0o644 370 bytes
/usr/include/pbseq/alignment/datastructures/alignment/FilterCriteria.hpp text/x-c++ root:root 0o644 5.3 KB
/usr/include/pbseq/alignment/datastructures/alignment/Path.h text/plain root:root 0o644 711 bytes
/usr/include/pbseq/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp text/x-c root:root 0o644 2.6 KB
/usr/include/pbseq/alignment/datastructures/alignmentset/ root:root 0o755
/usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp text/x-c++ root:root 0o644 2.6 KB
/usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp text/x-c root:root 0o644 8.9 KB
/usr/include/pbseq/alignment/datastructures/alignmentset/SAMQVConversion.hpp text/plain root:root 0o644 318 bytes
/usr/include/pbseq/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp text/x-c++ root:root 0o644 923 bytes
/usr/include/pbseq/alignment/datastructures/anchoring/ root:root 0o755
/usr/include/pbseq/alignment/datastructures/anchoring/AnchorParameters.hpp text/x-c++ root:root 0o644 846 bytes
/usr/include/pbseq/alignment/datastructures/anchoring/ClusterList.hpp text/x-c++ root:root 0o644 576 bytes
/usr/include/pbseq/alignment/datastructures/anchoring/MatchPos.hpp text/x-c++ root:root 0o644 4.3 KB
/usr/include/pbseq/alignment/datastructures/anchoring/WeightedInterval.hpp text/x-c++ root:root 0o644 2.5 KB
/usr/include/pbseq/alignment/files/ root:root 0o755
/usr/include/pbseq/alignment/files/BaseSequenceIO.hpp text/x-c++ root:root 0o644 520 bytes
/usr/include/pbseq/alignment/files/CCSIterator.hpp text/x-c++ root:root 0o644 383 bytes
/usr/include/pbseq/alignment/files/FragmentCCSIterator.hpp text/x-c++ root:root 0o644 585 bytes
/usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp text/x-c++ root:root 0o644 4.6 KB
/usr/include/pbseq/alignment/files/ReaderAgglomerateImpl.hpp text/plain root:root 0o644 1.0 KB
/usr/include/pbseq/alignment/format/ root:root 0o755
/usr/include/pbseq/alignment/format/BAMPrinter.hpp text/x-c root:root 0o644 982 bytes
/usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp text/x-c root:root 0o644 7.0 KB
/usr/include/pbseq/alignment/format/CompareSequencesPrinter.hpp text/x-c root:root 0o644 533 bytes
/usr/include/pbseq/alignment/format/CompareSequencesPrinterImpl.hpp text/plain root:root 0o644 2.6 KB
/usr/include/pbseq/alignment/format/IntervalPrinter.hpp text/x-c root:root 0o644 495 bytes
/usr/include/pbseq/alignment/format/SAMHeaderPrinter.hpp text/x-c++ root:root 0o644 10.3 KB
/usr/include/pbseq/alignment/format/SAMPrinter.hpp text/x-c root:root 0o644 3.7 KB
/usr/include/pbseq/alignment/format/SAMPrinterImpl.hpp text/x-c root:root 0o644 10.2 KB
/usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp text/x-c root:root 0o644 4.5 KB
/usr/include/pbseq/alignment/format/SummaryPrinter.hpp text/x-c root:root 0o644 353 bytes
/usr/include/pbseq/alignment/format/VulgarPrinter.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/format/XMLPrinter.hpp text/x-c root:root 0o644 3.9 KB
/usr/include/pbseq/alignment/ipc/ root:root 0o755
/usr/include/pbseq/alignment/ipc/SharedMemoryAllocator.hpp text/x-c root:root 0o644 1.1 KB
/usr/include/pbseq/alignment/MappingMetrics.hpp text/x-c++ root:root 0o644 2.7 KB
/usr/include/pbseq/alignment/query/ root:root 0o755
/usr/include/pbseq/alignment/query/PbiFilterZmwGroupQuery.h text/x-c++ root:root 0o644 981 bytes
/usr/include/pbseq/alignment/query/SequentialZmwGroupQuery.h text/x-c++ root:root 0o644 882 bytes
/usr/include/pbseq/alignment/qvs/ root:root 0o755
/usr/include/pbseq/alignment/qvs/QualityValueProfile.hpp text/x-c++ root:root 0o644 623 bytes
/usr/include/pbseq/alignment/simulator/ root:root 0o755
/usr/include/pbseq/alignment/simulator/CDFMap.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/simulator/ContextOutputList.hpp text/x-c++ root:root 0o644 2.9 KB
/usr/include/pbseq/alignment/simulator/ContextSample.hpp text/x-c++ root:root 0o644 579 bytes
/usr/include/pbseq/alignment/simulator/ContextSet.hpp text/x-c++ root:root 0o644 395 bytes
/usr/include/pbseq/alignment/simulator/LengthHistogram.hpp text/x-c++ root:root 0o644 510 bytes
/usr/include/pbseq/alignment/simulator/OutputList.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/simulator/OutputSample.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/pbseq/alignment/simulator/OutputSampleList.hpp text/x-c++ root:root 0o644 767 bytes
/usr/include/pbseq/alignment/simulator/OutputSampleListSet.hpp text/x-c root:root 0o644 3.3 KB
/usr/include/pbseq/alignment/simulator/QualitySample.hpp text/x-c++ root:root 0o644 579 bytes
/usr/include/pbseq/alignment/statistics/ root:root 0o755
/usr/include/pbseq/alignment/statistics/AnchorDistributionTable.hpp text/plain root:root 0o644 2.5 MB
/usr/include/pbseq/alignment/statistics/cdfs.hpp text/x-c root:root 0o644 36.7 KB
/usr/include/pbseq/alignment/statistics/LookupAnchorDistribution.hpp text/x-c root:root 0o644 297 bytes
/usr/include/pbseq/alignment/statistics/pdfs.hpp text/x-c root:root 0o644 284 bytes
/usr/include/pbseq/alignment/statistics/StatUtils.hpp text/x-c root:root 0o644 6.7 KB
/usr/include/pbseq/alignment/statistics/StatUtilsImpl.hpp text/x-c root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/statistics/VarianceAccumulator.hpp text/x-c++ root:root 0o644 412 bytes
/usr/include/pbseq/alignment/statistics/VarianceAccumulatorImpl.hpp text/x-c root:root 0o644 1.1 KB
/usr/include/pbseq/alignment/suffixarray/ root:root 0o755
/usr/include/pbseq/alignment/suffixarray/LCPTable.hpp text/x-c++ root:root 0o644 6.0 KB
/usr/include/pbseq/alignment/suffixarray/SharedSuffixArray.hpp text/x-c++ root:root 0o644 2.6 KB
/usr/include/pbseq/alignment/suffixarray/ssort.hpp text/plain root:root 0o644 15.2 KB
/usr/include/pbseq/alignment/suffixarray/SuffixArray.hpp text/x-c++ root:root 0o644 38.9 KB
/usr/include/pbseq/alignment/suffixarray/SuffixArrayTypes.hpp text/x-c root:root 0o644 586 bytes
/usr/include/pbseq/alignment/tuples/ root:root 0o755
/usr/include/pbseq/alignment/tuples/BaseTuple.hpp text/x-c++ root:root 0o644 568 bytes
/usr/include/pbseq/alignment/tuples/CompressedDNATuple.hpp text/x-c root:root 0o644 1.9 KB
/usr/include/pbseq/alignment/tuples/CountedTuple.h text/x-c root:root 0o644 206 bytes
/usr/include/pbseq/alignment/tuples/DNATuple.hpp text/x-c++ root:root 0o644 2.6 KB
/usr/include/pbseq/alignment/tuples/DNATupleImpl.hpp text/x-c root:root 0o644 6.3 KB
/usr/include/pbseq/alignment/tuples/DNATupleList.h text/x-c root:root 0o644 1.4 KB
/usr/include/pbseq/alignment/tuples/HashedTupleList.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/tuples/HashedTupleListImpl.hpp text/plain root:root 0o644 3.1 KB
/usr/include/pbseq/alignment/tuples/TupleCountTable.hpp text/x-c++ root:root 0o644 675 bytes
/usr/include/pbseq/alignment/tuples/TupleCountTableImpl.hpp text/x-c root:root 0o644 2.9 KB
/usr/include/pbseq/alignment/tuples/tuple.h text/x-c root:root 0o644 1.8 KB
/usr/include/pbseq/alignment/tuples/TupleList.hpp text/x-c root:root 0o644 1.2 KB
/usr/include/pbseq/alignment/tuples/TupleListImpl.hpp text/plain root:root 0o644 3.2 KB
/usr/include/pbseq/alignment/tuples/TupleMask.h text/plain root:root 0o644 557 bytes
/usr/include/pbseq/alignment/tuples/TupleMatching.hpp text/x-c root:root 0o644 772 bytes
/usr/include/pbseq/alignment/tuples/TupleMatchingImpl.hpp text/x-c root:root 0o644 3.3 KB
/usr/include/pbseq/alignment/tuples/TupleMetrics.hpp text/x-c++ root:root 0o644 332 bytes
/usr/include/pbseq/alignment/tuples/TupleOperations.h text/plain root:root 0o644 67 bytes
/usr/include/pbseq/alignment/tuples/TupleTranslations.h text/plain root:root 0o644 58 bytes
/usr/include/pbseq/alignment/utils/ root:root 0o755
/usr/include/pbseq/alignment/utils/FileOfFileNames.hpp text/x-c++ root:root 0o644 680 bytes
/usr/include/pbseq/alignment/utils/FileUtils.hpp text/x-c root:root 0o644 729 bytes
/usr/include/pbseq/alignment/utils/LogUtils.hpp text/x-c root:root 0o644 372 bytes
/usr/include/pbseq/alignment/utils/PhredUtils.hpp text/x-c root:root 0o644 185 bytes
/usr/include/pbseq/alignment/utils/RangeUtils.hpp text/x-c++ root:root 0o644 1.3 KB
/usr/include/pbseq/alignment/utils/RegionUtils.hpp text/x-c root:root 0o644 3.3 KB
/usr/include/pbseq/alignment/utils/RegionUtilsImpl.hpp text/plain root:root 0o644 1.6 KB
/usr/include/pbseq/alignment/utils/SimpleXMLUtils.hpp text/x-c root:root 0o644 2.0 KB
/usr/lib/ root:root 0o755
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/usr/lib/x86_64-linux-gnu/libblasr.a application/x-archive root:root 0o644 3.5 MB
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/usr/share/doc/libblasr-dev/copyright text/plain root:root 0o644 4.6 KB

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